diff --git a/main.py b/main.py
index 118dcf5c3639c78b4b7fbcd6ab0827529fda0c24..6e62803358c27fff5fe456462422039d923ba6da 100644
--- a/main.py
+++ b/main.py
@@ -1,3 +1,7 @@
+'''
+W.Wojnowski 2021
+'''
+# imports:
import tkinter as tk
from tkinter import ttk
from tkinter import messagebox
@@ -6,26 +10,27 @@ from matplotlib.backends.backend_tkagg import FigureCanvasTkAgg
from matplotlib.colors import LinearSegmentedColormap
from tkinter import filedialog
from math import log
+from fpdf import FPDF
+import os
+from datetime import datetime
-
+# start the main app:
root = tk.Tk()
-# root.title('AGREEPrep - Analytical Greenness Metric for Sample Preparation')
-root.title('AGREEPrep - *** Alpha for testing ***')
+root.title('AGREEPrep - Analytical Greenness Metric for Sample Preparation')
root.geometry('760x450')
-# root.geometry('850x525')
+root.iconbitmap('AGREEPrep_icon.ico')
+# fix the window dimensions:
root.resizable(0, 0)
-
-# light:
+# define the color palette. This can be based on https://flatuicolors.com
colors = {
'foreground': '#ffffff',
'background': '#dfe4ea',
'accent': '#70a1ff',
'text': 'black'
-}
+ }
-# configure the background
-# color palette: https://flatuicolors.com/palette/defo
+# configure the background:
root.configure(bg=colors['background'], padx=8, pady=8)
# create and configure a style to be used in tabs and labels
@@ -141,7 +146,9 @@ def call_info_popup():
win.wm_title('About and citation info')
title = ttk.Label(win_frame, text='Some title', font=('TkDefaultFont', 10, 'bold'), justify='left')
title.grid(column=0, row=0, padx=8, pady=8, sticky='w')
- text = ttk.Label(win_frame, text='About info, license, citation info', wraplength=280, justify='left')
+ text = ttk.Label(win_frame, text='About info, license, citation info (to be filled in after publication) \n'
+ 'The most recent version of the code is available at '
+ 'https://git.pg.edu.pl/p174235/agreeprep', wraplength=280, justify='left')
text.grid(column=0, row=1, padx=8, pady=8, sticky='w')
cite_button = ttk.Button(win_frame, text="Close", command=win.destroy)
@@ -181,6 +188,11 @@ def temp_func():
pass
+def generate_report():
+ report = Report(tabs, criteria)
+ report.savePDF()
+
+
def create_menu():
menu = tk.Menu()
root.config(menu=menu)
@@ -194,7 +206,7 @@ def create_menu():
file_menu.add_command(label='Save image', command=save_image)
file_menu.add_command(label='Re-set', command=reset_scores)
- file_menu.add_command(label='Report', command=temp_func)
+ file_menu.add_command(label='Report', command=generate_report)
about_menu = tk.Menu(menu)
about_menu.config(background=colors['background'],
activeborderwidth=5,
@@ -286,7 +298,7 @@ class Criterion:
self.optionvar_b.set('Select')
-# create the 12 criteria values. They can be later called as
+# create the 10 criteria values. They can be later called as
# list elements, e.g. to get the value of criterion 3: criteria[2].textvar.get()
criteria = []
for i in range(1, 11):
@@ -323,9 +335,11 @@ def clear_frame(frame):
global right_frame
right_frame = tk.Frame(root, bd=1, padx=2, pady=2, width=500, height=500, bg=colors['foreground'])
right_frame.pack(side='right', anchor='n')
+ print('clear frame done')
-# connect a float in range 0.0 : 1.0 to a colour in a spectrum from red to yellow to green (256 discrete colour values):
+# connect a float in range 0.0 : 1.0 to a colour in a spectrum from red to yellow to green
+# (256^3 discrete colour values):
def colorMapper(value):
cmap = LinearSegmentedColormap.from_list('rg', ["red", "yellow", "green"], N=256)
mapped_color = int(value * 255)
@@ -343,7 +357,7 @@ def change_dropdown(criterion, tab_choices, *args):
def create_plot(event=None):
# the event=None is passed so that the entry.bind
- # does not return a positional argument
+ # does not return a positional argument;
# close the current plot window (otherwise the generated plots remain open in the memory):
plt.close()
@@ -365,18 +379,22 @@ def create_plot(event=None):
pi = 3.141592653589793
# modify the weights so that the differences between lengths of slices are less extreme:
weights = [i + 4.5 for i in weights]
+
+ '''
# generate the thetas once and then just use the values to avoid importing numpy:
- # import numpy as np
- # theta = np.linspace(0.0, 2 * pi, N, endpoint=False)
- # print(theta)
+ import numpy as np
+ theta = np.linspace(0.0, 2 * pi, N, endpoint=False)
+ print(theta)
+ '''
+
theta = [0.0, 0.62831853, 1.25663706, 1.88495559, 2.51327412, 3.14159265, 3.76991118, 4.39822972, 5.02654825,
5.65486678]
radii = weights
width = 2 * pi / len(scores)
bars = ax.bar(theta, radii, width=width, bottom=0.0, edgecolor='black', linewidth=0.5)
- ax.set_theta_direction(-1) # theta=0 at the top
- ax.set_theta_zero_location("N") # theta increasing clockwise
+ ax.set_theta_direction(-1) # theta increasing clockwise
+ ax.set_theta_zero_location("N") # theta=0 at the top
# annotate the slices with numbers:
for i in range(10):
@@ -401,12 +419,121 @@ def create_plot(event=None):
plot_widget = canvas.get_tk_widget()
plot_widget.pack(side='top')
- # print('final score: %s' % calculate_score())
+ print('final score: %s' % calculate_score())
# start the GUI with a default plot
create_plot()
+
+class Report:
+ def __init__(self, tabs, criteria):
+ self.pdf = FPDF('P', 'mm', 'A4') # 'P' - Portrait
+ self.pdf.set_font('Helvetica', '', 10)
+ self.pdf.add_page()
+ self.pdf.set_margins(left=25, top=20)
+ self.tabs = tabs
+ self.criteria = criteria
+ plt.savefig('temp_figure.png', bbox_inches='tight')
+ # insert image (image, x, y, width):
+ self.pdf.image('temp_figure.png', 107, 10, 80)
+ # delete the temp file from drive:
+ os.remove('temp_figure.png')
+
+ self.fill_color = (240, 240, 240)
+
+ # insert title (Helvetica, 'B'old, 14 pt):
+ self.pdf.set_font('Helvetica', 'B', 18)
+ self.pdf.ln(20)
+ self.pdf.cell(100, 12, 'AGREEPrep')
+ self.pdf.set_font('Helvetica', '', 12)
+ self.pdf.ln(10)
+ self.pdf.multi_cell(55, 4, 'Analytical Greenness Metric for Sample Preparation')
+ self.pdf.ln(10)
+ self.pdf.set_font('Helvetica', '', 10)
+ self.pdf.cell(100, 12, datetime.now().strftime("%d/%m/%Y %H:%M:%S"))
+ self.pdf.ln(30)
+
+
+ def fieldColor(score):
+ x = colorMapper(score)[0] * 255
+ y = colorMapper(score)[1] * 255
+ z = colorMapper(score)[2] * 255
+ self.pdf.set_fill_color(x, y, z)
+ print(x, y, z)
+
+ def create_header():
+ self.pdf.set_font('Helvetica', 'B', 10)
+ self.pdf.cell(12, 6, '#', align='C')
+ self.pdf.cell(120, 6, 'Criterion', align='L')
+ self.pdf.cell(12, 6, 'Score', align='C')
+ self.pdf.cell(12, 6, 'Weight', align='C')
+ self.pdf.ln(8)
+ self.pdf.set_font('Helvetica', '', 10)
+
+ create_header()
+
+ def create_report_field(number, tabs, criterion, text):
+ self.pdf.cell(12, 12, number, border=1, align='C')
+ self.pdf.set_fill_color(240, 240, 240)
+ self.pdf.set_font('Helvetica', 'B', 10)
+ self.pdf.cell(120, 6, tabs.title, border=1, ln=2, align='L', fill=True)
+ self.pdf.set_font('Helvetica', '', 8)
+ self.pdf.cell(120, 6, text, border=1, ln=0, align='L', fill=False)
+ self.pdf.set_font('Helvetica', '', 10)
+
+ # modify the position of the following cells to ensure proper alignment:
+ x = self.pdf.get_x()
+ y = self.pdf.get_y()
+ self.pdf.set_xy(x, y - 6)
+
+ # set the colour of the score field:
+ fieldColor(float(criterion.textvar.get()))
+ self.pdf.cell(12, 12, str(round(float(criterion.textvar.get()), 2)), border=1, fill=True, align='C')
+ self.pdf.set_fill_color(240, 240, 240)
+ self.pdf.cell(12, 12, str(criterion.radiovar.get()), border=1, fill=True, align='C')
+ self.pdf.ln(15)
+
+ create_report_field('1.', self.tabs[0], self.criteria[0],
+ ('Sample preparation placement: ' + self.criteria[0].optionvar.get()))
+
+ create_report_field('2.', self.tabs[1], self.criteria[1],
+ ('Mass [g] or volume [mL] of waste: ' + self.criteria[1].valuevar.get()))
+
+ create_report_field('3.', self.tabs[2], self.criteria[2],
+ ('Mass [g] or volume [mL] of problematic materials: ' + self.criteria[2].valuevar.get()))
+
+ create_report_field('4.', self.tabs[3], self.criteria[3],
+ (self.criteria[3].optionvar.get()))
+
+ create_report_field('5.', self.tabs[4], self.criteria[4],
+ ('Mass [g] or volume [mL] of the sample: ' + self.criteria[4].valuevar.get()))
+
+ create_report_field('6.', self.tabs[5], self.criteria[5],
+ ('Approximate energy consumption per analysis [W]: ' + self.criteria[5].valuevar.get()))
+
+ create_report_field('7.', self.tabs[6], self.criteria[6],
+ ('Hourly sample throughput: ' + self.criteria[6].valuevar.get()))
+
+ create_report_field('8.', self.tabs[7], self.criteria[7],
+ ('No. of sample prep. steps: ' + self.criteria[7].optionvar_a.get() +
+ '; degree if automation: ' + self.criteria[7].optionvar_b.get()))
+
+ create_report_field('9.', self.tabs[8], self.criteria[8],
+ (self.criteria[8].optionvar.get()))
+
+ create_report_field('10.', self.tabs[9], self.criteria[9],
+ ('No. of distinct hazards: ' + self.criteria[9].optionvar.get()))
+
+ def savePDF(self):
+ ftypes = [('PDF file', '.pdf'), ('All files', '*')]
+ filename = filedialog.asksaveasfilename(filetypes=ftypes, defaultextension='.pdf')
+ # save the pdf
+ self.pdf.output(filename, 'F')
+ # open the file in the system default viewer:
+ os.system('start ' + filename)
+
+
'''
Populate the tabs
'''
@@ -434,7 +561,7 @@ dropdown1.grid(column=0, row=3, padx=8, pady=8, sticky='w')
# # --------------------------- TAB2 ---------------------------
tab2 = Tab(tab_no='2', title='Waste',
- text1='In analytical chemistry, all material inputs, including'
+ text1='In analytical chemistry, all material inputs, including '
'the sample preparation stage, can be treated as waste.',
text2='Input mass [g] or volume [mL] of waste:', criterion=criteria[1])
# create a frame to pack the entry into in order to get a border for the entry:
@@ -661,11 +788,11 @@ tab8 = Tab(tab_no='8', title='Automation',
text2='1. Select the number of discrete steps in the sample preparation procedure:',
criterion=criteria[7])
-tab8a_choices = {'⤠2 steps': 1.0,
+tab8a_choices = {'2 steps or fewer': 1.0,
'3 steps': 0.75,
'4 steps': 0.50,
'5 steps': 0.25,
- '⼠6 steps': 0}
+ '6 steps or more': 0}
def calc_crit_8(event=None):
@@ -726,11 +853,11 @@ tab9 = Tab(tab_no='9', title='Analytical instrumentation for final determination
text2='Select the final determination technique or its closest analogue:',
criterion=criteria[8])
-tab9_choices = {'Simple, readily available detection: smartphones, desktop scanners, paper strips detection, etc.': 1.0,
+tab9_choices = {'Simple, readily available detection: smartphones, desktop scanners, paper strips, etc.': 1.0,
'Spectrophotometry, surface analysis techniques, voltammetry, potentiometry, etc.': 0.75,
'Gas chromatography with non-MS detection, atomic absorption spectroscopy, etc.': 0.50,
'Liquid chromatography, gas chromatography with quadrupole detection, etc.': 0.25,
- 'Advanced mass spectrometry techniques with high energy and/or noble gas consumption: ICP-OES, ICP-MS, etc.': 0}
+ 'Adv. mass spec. with high energy and/or noble gas consumption: ICP-OES, ICP-MS, etc.': 0}
dropdown9 = ttk.OptionMenu(tab9.frame, criteria[8].optionvar, criteria[8].optionvar.get(), *tab9_choices.keys(),
command=lambda x: change_dropdown(criteria[8], tab9_choices))
@@ -769,12 +896,18 @@ dropdown10['menu'].config(background=colors['background'],
dropdown10.grid(column=0, row=3, padx=8, pady=8, sticky='w')
+'''
+End of the tabs
+'''
+
+# Create a list of the tabs and generate the report:
+tabs = [tab1, tab2, tab3, tab4, tab5, tab6, tab7, tab8, tab9, tab10]
+
def main():
- root.mainloop()
+ while True:
+ root.mainloop()
main()
-
-input('Press any key to close the console')